Im not sure if this will help but try to get different drivers for your USB ports. If you can, try plugging your mouse and keyboard into the PS/2 ports and leave them there. Then get something like a Wingman controller or a webcam and plug it into the USB port. See if either of these devices cause any problems.
What motherboard are you running? Im also curious as to whether the USB ports are fixed to the board or if they are an add-on connected by a cable. Are the USB ports A PCI card or cable connected?
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