When your ship get captured by a tractor beam, you get to choose one character that will stay behind and free the others. To do that, mission enter stealth mode.
She's not in your party when that cutscene happen, so if your character has a spot check lower that mission's hide skill, it's going to be almost impossible to see her.
Since you can't see her, the game can't go on, because the engine won't allow interaction with invisible things, so it can't interact with mission in the cutscene (make her move or talk), so the game hang there indifinitely.
They fixed this problem in the patch, but just avoid chosing that character at that point and you'll be fine.
I thought this was clear even when I stayed vague...
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