Firstly welcome to Ironworks!
About the program crash I don't know what could cause this. Just an idea: have you tried putting in the wires you find next to the dead body? In order to finish the game you don't have to go anyhere near the teleporter, it just makes movement over large distances much easier.
There aren't any quests associated with it.
Being hostile to the T'rang does not have any negative effect on being able to complete the game, you just miss out on some quests and some experience.
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