Bodhi's body is in that gondola-thing (you can't take her body with you, but you can stake it), but Aerie's body is in the main room on that floor, the one with the blood pool. Mouse around in the area where she died and you'll find her body.
If, in fact, it ISN'T there, you'd be justified in cheating it in, because that's definitely a bug.
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Volothamp's Comeuppance
Everything you ever needed to know about the entire Baldur's Gate series......except spoilers.
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